imageware
Class ShortSet

java.lang.Object
  imageware.ShortBuffer
      imageware.ShortAccess
          imageware.ShortPointwise
              imageware.ShortProcess
                  imageware.ShortSet

All Implemented Interfaces:

Access, Buffer, ImageWare, Pointwise, Process

public class ShortSet
extends ShortProcess
implements ImageWare

Class ShortSet.

Field Summary

Fields inherited from class imageware.ShortBuffer

data, nx, nxy, ny, nz

Fields inherited from interface imageware.ImageWare

BLUE, BYTE, CREATE, DOUBLE, FLOAT, GREEN, MIRROR, NONE, PERIODIC, RED, SHORT, UNDEFINED, UNDEFINED_BOUNDARY, UNDEFINED_TYPE, WRAP

Constructor Summary

protected	ShortSet(byte[][][] array, int mode)
protected	ShortSet(byte[][] array, int mode)
protected	ShortSet(byte[] array, int mode)
protected	ShortSet(double[][][] array, int mode)
protected	ShortSet(double[][] array, int mode)
protected	ShortSet(double[] array, int mode)
protected	ShortSet(float[][][] array, int mode)
protected	ShortSet(float[][] array, int mode)
protected	ShortSet(float[] array, int mode)
protected	ShortSet(java.awt.Image image, int mode)
protected	ShortSet(ij.ImageStack stack, byte chan)
protected	ShortSet(ij.ImageStack stack, int mode)
protected	ShortSet(int nx, int ny, int nz)
protected	ShortSet(short[][][] array, int mode)
protected	ShortSet(short[][] array, int mode)
protected	ShortSet(short[] array, int mode)

Method Summary

ImageWare	convert(int type) convert the imageware in a specified type.
void	copy(ImageWare source) Copy all the data of source in the current imageware.
ImageWare	duplicate() Duplicate the imageware.
double	getMaximum() Return the maximum value of this imageware.
double	getMean() Return the mean value of this imageware.
double	getMinimum() Return the minimum value of this imageware.
double[]	getMinMax() Return the the minumum [0] and the maximum [1] value of this imageware.
double	getNorm1() Return the norm value of order 1.
double	getNorm2() Return the norm value of order 2.
double	getTotal() Return the sum of all pixel in this imageware.
void	printInfo() Print information of this ImageWare object.
ImageWare	replicate() Replicate the imageware.
ImageWare	replicate(int type) Replicate the imageware.
void	show() Show this ImageWare object.
void	show(java.lang.String title) Show the data in ImagePlus object with a specify title.

Methods inherited from class imageware.ShortProcess

add, divide, max, min, multiply, smoothGaussian, smoothGaussian, subtract

Methods inherited from class imageware.ShortPointwise

abs, add, addGaussianNoise, addSaltPepper, addUniformNoise, buildImageStack, clip, clip, divide, exp, fillConstant, fillGaussianNoise, fillRamp, fillSaltPepper, fillUniformNoise, invert, log, multiply, negate, pow, rescale, rescale, rescaleCenter, sqr, sqrt, subtract, threshold, threshold, thresholdHard, thresholdSoft

Methods inherited from class imageware.ShortAccess

getBlockX, getBlockX, getBlockX, getBlockX, getBlockXY, getBlockXY, getBlockXY, getBlockXY, getBlockXYZ, getBlockXYZ, getBlockXYZ, getBlockXYZ, getBlockXZ, getBlockXZ, getBlockXZ, getBlockXZ, getBlockY, getBlockY, getBlockY, getBlockY, getBlockYZ, getBlockYZ, getBlockYZ, getBlockYZ, getBlockZ, getBlockZ, getBlockZ, getBlockZ, getBoundedX, getBoundedX, getBoundedX, getBoundedX, getBoundedXY, getBoundedXY, getBoundedXY, getBoundedXY, getBoundedXYZ, getBoundedXYZ, getBoundedXYZ, getBoundedXYZ, getBoundedXZ, getBoundedXZ, getBoundedXZ, getBoundedXZ, getBoundedY, getBoundedY, getBoundedY, getBoundedY, getBoundedYZ, getBoundedYZ, getBoundedYZ, getBoundedYZ, getBoundedZ, getBoundedZ, getBoundedZ, getBoundedZ, getInterpolatedPixel, getInterpolatedPixel, getNeighborhoodX, getNeighborhoodX, getNeighborhoodX, getNeighborhoodX, getNeighborhoodXY, getNeighborhoodXY, getNeighborhoodXY, getNeighborhoodXY, getNeighborhoodXYZ, getNeighborhoodXYZ, getNeighborhoodXYZ, getNeighborhoodXYZ, getNeighborhoodXZ, getNeighborhoodXZ, getNeighborhoodXZ, getNeighborhoodXZ, getNeighborhoodY, getNeighborhoodY, getNeighborhoodY, getNeighborhoodY, getNeighborhoodYZ, getNeighborhoodYZ, getNeighborhoodYZ, getNeighborhoodYZ, getNeighborhoodZ, getNeighborhoodZ, getNeighborhoodZ, getNeighborhoodZ, getPixel, getPixel, putBoundedX, putBoundedX, putBoundedX, putBoundedX, putBoundedXY, putBoundedXY, putBoundedXY, putBoundedXY, putBoundedXYZ, putBoundedXYZ, putBoundedXYZ, putBoundedXYZ, putBoundedXZ, putBoundedXZ, putBoundedXZ, putBoundedXZ, putBoundedY, putBoundedY, putBoundedY, putBoundedY, putBoundedYZ, putBoundedYZ, putBoundedYZ, putBoundedYZ, putBoundedZ, putBoundedZ, putBoundedZ, putBoundedZ, putPixel

Methods inherited from class imageware.ShortBuffer

getDepth, getDimension, getHeight, getSize, getSizeX, getSizeY, getSizeZ, getSliceByte, getSliceDouble, getSliceFloat, getSliceShort, getTotalSize, getType, getTypeToString, getVolume, getWidth, getX, getX, getX, getX, getX, getXY, getXY, getXY, getXY, getXY, getXYZ, getXYZ, getXYZ, getXYZ, getXYZ, getXZ, getXZ, getXZ, getXZ, getXZ, getY, getY, getY, getY, getY, getYZ, getYZ, getYZ, getYZ, getYZ, getZ, getZ, getZ, getZ, getZ, isSameSize, putX, putX, putX, putX, putX, putXY, putXY, putXY, putXY, putXY, putXYZ, putXYZ, putXYZ, putXYZ, putXYZ, putXZ, putXZ, putXZ, putXZ, putXZ, putY, putY, putY, putY, putY, putYZ, putYZ, putYZ, putYZ, putYZ, putZ, putZ, putZ, putZ, putZ, throw_constructor, throw_constructor, throw_get, throw_put

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface imageware.Process

add, divide, max, min, multiply, smoothGaussian, smoothGaussian, subtract

Methods inherited from interface imageware.Pointwise

abs, add, addGaussianNoise, addSaltPepper, addUniformNoise, buildImageStack, clip, clip, divide, exp, fillConstant, fillGaussianNoise, fillRamp, fillSaltPepper, fillUniformNoise, invert, log, multiply, negate, pow, rescale, rescale, rescaleCenter, sqr, sqrt, subtract, threshold, threshold, thresholdHard, thresholdSoft

Methods inherited from interface imageware.Access

getBlockX, getBlockX, getBlockX, getBlockX, getBlockXY, getBlockXY, getBlockXY, getBlockXY, getBlockXYZ, getBlockXYZ, getBlockXYZ, getBlockXYZ, getBlockXZ, getBlockXZ, getBlockXZ, getBlockXZ, getBlockY, getBlockY, getBlockY, getBlockY, getBlockYZ, getBlockYZ, getBlockYZ, getBlockYZ, getBlockZ, getBlockZ, getBlockZ, getBlockZ, getBoundedX, getBoundedX, getBoundedX, getBoundedX, getBoundedXY, getBoundedXY, getBoundedXY, getBoundedXY, getBoundedXYZ, getBoundedXYZ, getBoundedXYZ, getBoundedXYZ, getBoundedXZ, getBoundedXZ, getBoundedXZ, getBoundedXZ, getBoundedY, getBoundedY, getBoundedY, getBoundedY, getBoundedYZ, getBoundedYZ, getBoundedYZ, getBoundedYZ, getBoundedZ, getBoundedZ, getBoundedZ, getBoundedZ, getInterpolatedPixel, getInterpolatedPixel, getNeighborhoodX, getNeighborhoodX, getNeighborhoodX, getNeighborhoodX, getNeighborhoodXY, getNeighborhoodXY, getNeighborhoodXY, getNeighborhoodXY, getNeighborhoodXYZ, getNeighborhoodXYZ, getNeighborhoodXYZ, getNeighborhoodXYZ, getNeighborhoodXZ, getNeighborhoodXZ, getNeighborhoodXZ, getNeighborhoodXZ, getNeighborhoodY, getNeighborhoodY, getNeighborhoodY, getNeighborhoodY, getNeighborhoodYZ, getNeighborhoodYZ, getNeighborhoodYZ, getNeighborhoodYZ, getNeighborhoodZ, getNeighborhoodZ, getNeighborhoodZ, getNeighborhoodZ, getPixel, getPixel, putBoundedX, putBoundedX, putBoundedX, putBoundedX, putBoundedXY, putBoundedXY, putBoundedXY, putBoundedXY, putBoundedXYZ, putBoundedXYZ, putBoundedXYZ, putBoundedXYZ, putBoundedXZ, putBoundedXZ, putBoundedXZ, putBoundedXZ, putBoundedY, putBoundedY, putBoundedY, putBoundedY, putBoundedYZ, putBoundedYZ, putBoundedYZ, putBoundedYZ, putBoundedZ, putBoundedZ, putBoundedZ, putBoundedZ, putPixel

Methods inherited from interface imageware.Buffer

getDepth, getDimension, getHeight, getSize, getSizeX, getSizeY, getSizeZ, getSliceByte, getSliceDouble, getSliceFloat, getSliceShort, getTotalSize, getType, getTypeToString, getVolume, getWidth, getX, getX, getX, getX, getX, getXY, getXY, getXY, getXY, getXY, getXYZ, getXYZ, getXYZ, getXYZ, getXYZ, getXZ, getXZ, getXZ, getXZ, getXZ, getY, getY, getY, getY, getY, getYZ, getYZ, getYZ, getYZ, getYZ, getZ, getZ, getZ, getZ, getZ, isSameSize, putX, putX, putX, putX, putX, putXY, putXY, putXY, putXY, putXY, putXYZ, putXYZ, putXYZ, putXYZ, putXYZ, putXZ, putXZ, putXZ, putXZ, putXZ, putY, putY, putY, putY, putY, putYZ, putYZ, putYZ, putYZ, putYZ, putZ, putZ, putZ, putZ, putZ

Constructor Detail

ShortSet

protected ShortSet(int nx,
                   int ny,
                   int nz)

ShortSet

protected ShortSet(java.awt.Image image,
                   int mode)

ShortSet

protected ShortSet(ij.ImageStack stack,
                   int mode)

ShortSet

protected ShortSet(ij.ImageStack stack,
                   byte chan)

ShortSet

protected ShortSet(byte[] array,
                   int mode)

ShortSet

protected ShortSet(byte[][] array,
                   int mode)

ShortSet

protected ShortSet(byte[][][] array,
                   int mode)

ShortSet

protected ShortSet(short[] array,
                   int mode)

ShortSet

protected ShortSet(short[][] array,
                   int mode)

ShortSet

protected ShortSet(short[][][] array,
                   int mode)

ShortSet

protected ShortSet(float[] array,
                   int mode)

ShortSet

protected ShortSet(float[][] array,
                   int mode)

ShortSet

protected ShortSet(float[][][] array,
                   int mode)

ShortSet

protected ShortSet(double[] array,
                   int mode)

ShortSet

protected ShortSet(double[][] array,
                   int mode)

ShortSet

protected ShortSet(double[][][] array,
                   int mode)

Method Detail

duplicate

public ImageWare duplicate()

Duplicate the imageware. Create a new imageware with the same size, same type and same data than the calling one.

Specified by:

duplicate in interface ImageWare

Returns:

a duplicated version of this imageware

replicate

public ImageWare replicate()

Replicate the imageware. Create a new imageware with the same size, same type than the calling one. The data are not copied.

Specified by:

replicate in interface ImageWare

Returns:

a replicated version of this imageware

replicate

public ImageWare replicate(int type)

Replicate the imageware. Create a new imageware with the same size and a specified type than the calling one. The data are not copied.

Specified by:

replicate in interface ImageWare

Parameters:

type - requested type

Returns:

a replicated version of this imageware

copy

public void copy(ImageWare source)

Copy all the data of source in the current imageware. The source should have the same size and same type than the calling one.

Specified by:

copy in interface ImageWare

Parameters:

source - a source imageware

convert

public ImageWare convert(int type)

convert the imageware in a specified type. Create a new imageware with the same size and converted data than the calling one.

Specified by:

convert in interface ImageWare

Parameters:

type - indicates the type of the output

Returns:

a converted version of this imageware

printInfo

public void printInfo()

Print information of this ImageWare object.

Specified by:

printInfo in interface ImageWare

show

public void show()

Show this ImageWare object.

Specified by:

show in interface ImageWare

show

public void show(java.lang.String title)

Show the data in ImagePlus object with a specify title.

Specified by:

show in interface ImageWare

Parameters:

title - a string given the title of the window

getMinimum

public double getMinimum()

Return the minimum value of this imageware.

Specified by:

getMinimum in interface ImageWare

Returns:

the min value of this imageware

getMaximum

public double getMaximum()

Return the maximum value of this imageware.

Specified by:

getMaximum in interface ImageWare

Returns:

the max value of this imageware

getMean

public double getMean()

Return the mean value of this imageware.

Specified by:

getMean in interface ImageWare

Returns:

the mean value of this imageware

getNorm1

public double getNorm1()

Return the norm value of order 1.

Specified by:

getNorm1 in interface ImageWare

Returns:

the norm value of this imageware in L1 sense

getNorm2

public double getNorm2()

Return the norm value of order 2.

Specified by:

getNorm2 in interface ImageWare

Returns:

the norm value of this imageware in L2 sense

getTotal

public double getTotal()

Return the sum of all pixel in this imageware.

Specified by:

getTotal in interface ImageWare

Returns:

the total sum of all pixel in this imageware

getMinMax

public double[] getMinMax()

Return the the minumum [0] and the maximum [1] value of this imageware. Faster routine than call one getMinimum() and then one getMaximum().

Specified by:

getMinMax in interface ImageWare

Returns:

an array of two values, the min and the max values of the images